Maize Interactome

Service

agriGO The agriGO is a web-based tool and database for the gene ontology analysis.
MaizeGDB MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays.
KEGG KEGG: Kyoto Encyclopedia of Genes and Genomes.

Software

ECharts version: 2.0 ECharts: A Declarative Framework for Rapid Construction of Web-based Visualization.
Gephi version: 0.9.2 Gephi is the leading visualization and exploration software for all kinds of graphs and networks.
igraph version: 1.0.0 igraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use.
NetworkX version: 1.11 NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
MCL version: 14-137 The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs based on simulation of flow in graphs.
rsgcc version: 1.0.6 Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data.
Sigmajs version: v1.2.0 Sigma is a JavaScript library dedicated to graph drawing.
Scikit-learn version: 0.21.2 Machine Learning in Python, simple and efficient tools for data mining and data analysis.
Bootstrap version: v4.3.1 Bootstrap is an open source toolkit for developing with HTML, CSS, and JS.
Jsonexporter-plugin This repository is an out-of-the-box development environment for Gephi plugins.
BLAST Basic Local Alignment Search Tool.
GBrowse GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes.
MR Pairwise measurements of gene coexpression were specified as mutual ranks(MR).

Genome Reference

Z.mays Improved maize reference genome with single-molecule technologies.